PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G048200.3
Common NameB456_011G048200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 816aa    MW: 89759.7 Da    PI: 6.8186
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G048200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23130231199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Gorai.011G048200.3 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 217
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Gorai.011G048200.3 218 -WNDKNQLLLGIRRA 231
                         .7888889****997 PP

2Auxin_resp1201.8e-39256339183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv+ ++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Gorai.011G048200.3 256 AAHAAATNSRFTIFYNPRASPSEFVITLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 339
                         79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-41124245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-21129230No hitNo description
PfamPF023627.0E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492130232IPR003340B3 DNA binding domain
SMARTSM010193.3E-24130232IPR003340B3 DNA binding domain
PfamPF065072.3E-34256339IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG  120
TPGKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEIE  360
PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG  420
VSPWMQSRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GTASLQFQQP QNGPCRPAAL  480
VQPQMLQQTL PQAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNNQQQQQP  540
QHSMSQQHQQ LVDHQQIPSP VSAMSQYASA SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS  600
PVVSPLHSLL GSFPQDESSN LLNLPRTNPI MTTSAWPSKR VAVDVLSSGS PQCVLPQVEQ  660
LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DSQSHLLFGV NIEPSSVLMQ NGMSGLRGVG  720
TDSDSTSIPF FSNYMSTAGN DFSVNPAMTP SSCIDESGFL QSQENVGQSN PQTRTFVKGV  780
REQCLVYQDT FPTGSAANGQ TRPGASKLCA SSEAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611436041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454611.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0D2UMF80.0A0A0D2UMF8_G
STRINGVIT_10s0003g04100.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]